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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 320ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 320DNA binding
  • 3Transcription
Target of assay
  • 979histone modification
  • 978histone
  • 494narrow histone mark
  • 483broad histone mark
  • 462transcription factor
  • 328control
  • 101RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 61November, 2017
  • 48August, 2017
  • 39October, 2019
  • 28October, 2018
  • 23May, 2019
  • 23May, 2020
  • 21December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
Available data
  • 291bam
  • 153fastq
  • 68tagAlign
  • 13bigWig
  • 6bed bed3+
  • 3tsv
Organism
  • 327Homo sapiens
Biosample type
  • 183tissue
  • 76cell line
  • 36in vitro differentiated cells
  • 32primary cell
  • 1stem cell
Organ
  • 100liver
  • 50pancreas
  • 34connective tissue
  • 28brain
  • 28epithelium
  • 24adipose tissue
  • 20blood vessel
  • 20heart
  • 20vasculature
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 328AMP
Genome assembly (visualization)
  • 19hg19
  • 9GRCh38
Lab
  • 311AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

328 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver42
islet of Langerhans112
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG253
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte7
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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