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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 494ChIP-seq
Assay category
  • 494DNA binding
Target of assay
  • 979histone modification
  • 978histone
  • 494narrow histone mark
  • 483broad histone mark
  • 462transcription factor
  • 328control
  • 101RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 141October, 2019
  • 72August, 2017
  • 64May, 2021
  • 34May, 2019
  • 34November, 2017
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 420bigWig
  • 409bed narrowPeak
  • 385bam
  • 173tagAlign
  • 144bigBed narrowPeak
  • 90fastq
  • 24bed broadPeak
  • 10bed bed3+
  • 10bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 493Homo sapiens
Biosample type
  • 320tissue
  • 112primary cell
  • 43in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 114brain
  • 69pancreas
  • 59liver
  • 47epithelium
  • 40heart
  • 24blood vessel
  • 24vasculature
  • 21connective tissue
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 450AMP
  • 44T1D
Genome assembly (visualization)
  • 391hg19
  • 390GRCh38
Lab
  • 417AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

494 results

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Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans34
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
in vitro differentiated cells
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
adipocyte4
cell line
HepG28
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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