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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 462ChIP-seq
Assay category
  • 462DNA binding
Target of assay
  • 979histone modification
  • 978histone
  • 494narrow histone mark
  • 483broad histone mark
  • 462transcription factor
  • 328control
  • 101RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 202November, 2017
  • 64November, 2018
  • 42December, 2017
  • 38August, 2017
  • 28December, 2018
  • 16May, 2021
  • 14January, 2019
  • 14October, 2018
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 444bigWig
  • 433bam
  • 417bed narrowPeak
  • 402fastq
  • 361bigBed narrowPeak
  • 47bed broadPeak
  • 47bigBed broadPeak
  • 17bed bed3+
  • 9tagAlign
Organism
  • 462Homo sapiens
Biosample type
  • 320cell line
  • 91tissue
  • 43in vitro differentiated cells
  • 8primary cell
Organ
  • 296liver
  • 51blood
  • 51bodily fluid
  • 34connective tissue
  • 17adipose tissue
  • 17heart
  • 17pancreas
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3embryo
  • 2brain
  • 1eye
Project
  • 462AMP
Genome assembly (visualization)
  • 435hg19
  • 417GRCh38
Lab
  • 434AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 30missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer
BIOSAMPLE
ASSAY

462 results

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Clear Filters
ChIP-seq
cell line
HepG2256
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver36
white adipose tissue12
body of pancreas9
islet of Langerhans6
spleen6
in vitro differentiated cells
adipocyte16
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
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