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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 232ChIP-seq
  • 10DNase-seq
  • 4RRBS
Assay category
  • 232DNA binding
  • 10DNA accessibility
  • 4DNA methylation
Target of assay
  • 96transcription factor
  • 87histone
  • 87histone modification
  • 49control
  • 44broad histone mark
  • 43narrow histone mark
  • 19RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 110November, 2017
  • 64August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 5October, 2017
  • 2September, 2017
  • 1January, 2019
Available data
  • 246fastq
  • 241bam
  • 203bigWig
  • 188bed narrowPeak
  • 140bigBed narrowPeak
  • 86bed broadPeak
  • 79bigBed broadPeak
  • 34bed bed3+
  • 34tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 239Homo sapiens
Biosample type
  • 111cell line
  • 45primary cell
  • 44in vitro differentiated cells
  • 44tissue
  • 2stem cell
Organ
  • 118liver
  • 45pancreas
  • 29epithelium
  • 18embryo
  • 14brain
  • 4connective tissue
  • 4vasculature
  • 3adipose tissue
  • 2blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 246AMP
Genome assembly (visualization)
  • 214hg19
  • 180GRCh38
Lab
  • 246AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

246 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2110
GM128781
primary cell
skeletal muscle myoblast151
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
islet of Langerhans11
pancreas10
brain52
liver421
adipose tissue2
stem cell
hESC2
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