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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 284ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 4DNase-seq
  • 1FAIRE-seq
Assay category
  • 284DNA binding
  • 89Transcription
  • 15DNA methylation
  • 10DNA accessibility
Target of assay
  • 195histone modification
  • 194histone
  • 108broad histone mark
  • 86narrow histone mark
  • 47control
  • 42transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 715February, 2021
  • 401November, 2017
  • 399May, 2021
  • 398August, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 19April, 2020
  • 19October, 2017
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 7September, 2017
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 274fastq
  • 269bam
  • 262bigWig
  • 132bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 41bigBed narrowPeak
  • 40bed broadPeak
  • 29bed bed3+
  • 14bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 391Homo sapiens
Biosample type
  • 279tissue
  • 61in vitro differentiated cells
  • 58primary cell
Organ
  • 185pancreas
  • 118connective tissue
  • 57adipose tissue
  • 52liver
  • 29epithelium
  • 26musculature of body
Project
  • 398AMP
Genome assembly (visualization)
  • 266hg19
  • 240GRCh38
Lab
  • 398AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

398 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans398911
liver4631
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte601
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
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