Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 212ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 212DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 183histone
  • 183histone modification
  • 116narrow histone mark
  • 67broad histone mark
  • 31control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 89November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 18July, 2019
  • 12February, 2020
  • 12October, 2017
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 238bam
  • 217bigWig
  • 198bed narrowPeak
  • 122bigBed narrowPeak
  • 114tagAlign
  • 43bed broadPeak
  • 36bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 15fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 280Homo sapiens
Biosample type
  • 261tissue
  • 19primary cell
Organ
  • 939pancreas
  • 786liver
  • 677connective tissue
  • 522epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 280brain
  • 234vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 280AMP
Genome assembly (visualization)
  • 212GRCh38
  • 159hg19
Lab
  • 280AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

280 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain1614111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell211
choroid plexus epithelial cell211
brain pericyte11
cerebellar granule cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego