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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 111ChIP-seq
Assay category
  • 111DNA binding
Target of assay
  • 1008histone modification
  • 1007histone
  • 511narrow histone mark
  • 506transcription factor
  • 496broad histone mark
  • 335control
  • 111RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 34November, 2017
  • 21November, 2018
  • 11October, 2018
  • 8August, 2017
  • 6January, 2019
  • 5May, 2019
  • 5May, 2021
  • 5May, 2024
  • 4April, 2019
  • 4December, 2017
  • 4June, 2019
  • 2December, 2018
  • 1August, 2021
  • 1November, 2019
Available data
  • 103bigWig
  • 102bed narrowPeak
  • 100bam
  • 90bigBed narrowPeak
  • 86fastq
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 2bed bed3+
  • 1tar
Organism
  • 111Homo sapiens
Biosample type
  • 64cell line
  • 28tissue
  • 11in vitro differentiated cells
  • 8primary cell
Organ
  • 57liver
  • 11heart
  • 10blood
  • 10bodily fluid
  • 10connective tissue
  • 9pancreas
  • 6epithelium
  • 5adipose tissue
  • 3blood vessel
  • 3kidney
  • 3vasculature
  • 1artery
  • 1brain
  • 1eye
Project
  • 111AMP
Genome assembly (visualization)
  • 98GRCh38
  • 97hg19
Lab
  • 100AMP-T2D consortium
  • 5Kyle Gaulton, UCSD
  • 5Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 3inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

111 results

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Clear Filters
ChIP-seq
cell line
HepG253
GM1287810
EndoC_BH11
tissue
body of pancreas5
left cardiac atrium5
heart left ventricle3
omental fat pad3
islet of Langerhans2
in vitro differentiated cells
embryonic stem cell5
adipocyte4
hepatocyte2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
cardiac fibroblast1
cardiac muscle cell1
epithelial cell of proximal tubule1
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