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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 496ChIP-seq
Assay category
  • 496DNA binding
Target of assay
  • 1008histone modification
  • 1007histone
  • 511narrow histone mark
  • 506transcription factor
  • 496broad histone mark
  • 335control
  • 111RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 108August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 49November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 7October, 2017
  • 6November, 2019
  • 4January, 2019
Available data
  • 423bigWig
  • 416bed narrowPeak
  • 374bam
  • 239bigBed narrowPeak
  • 143tagAlign
  • 113fastq
  • 34bed broadPeak
  • 15bigBed broadPeak
  • 11bed bed3+
Organism
  • 492Homo sapiens
Biosample type
  • 299tissue
  • 122primary cell
  • 56in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 77pancreas
  • 67brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 44epithelium
  • 41liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 452AMP
  • 44T1D
Genome assembly (visualization)
  • 388GRCh38
  • 367hg19
Lab
  • 401AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 22missing controlled_by
Audit category:
  • 14inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

496 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
tibial artery14
islet of Langerhans13
layer of hippocampus12
skeletal muscle tissue12
body of pancreas11
brain10
kidney10
ascending aorta8
caudate nucleus8
endocrine pancreas8
germinal matrix8
heart8
pancreas8
substantia nigra8
temporal lobe8
angular gyrus7
aorta7
cingulate gyrus7
heart right ventricle7
middle frontal area 467
thoracic aorta7
muscle of leg4
right atrium auricular region4
spleen4
right cardiac atrium3
right lobe of liver3
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
skeletal muscle myoblast6
mesenchymal stem cell4
pancreatic acinar cell4
skeletal muscle satellite cell4
epithelial cell of proximal tubule3
pancreatic alpha cell3
pancreatic beta cell3
kidney epithelial cell2
hepatocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
neutrophil1
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
definitive endodermal cell2
primitive gut cell2
Posterior foregut1
endocrine cell1
posterior foregut1
cell line
HepG28
EndoC_BH16
Panc14
stem cell
hESC1
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