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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 506ChIP-seq
Assay category
  • 506DNA binding
Target of assay
  • 1008histone modification
  • 1007histone
  • 511narrow histone mark
  • 506transcription factor
  • 496broad histone mark
  • 335control
  • 111RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 241November, 2017
  • 64November, 2018
  • 42August, 2017
  • 42December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 488bigWig
  • 477bam
  • 461bed narrowPeak
  • 446fastq
  • 402bigBed narrowPeak
  • 46bed broadPeak
  • 46bigBed broadPeak
  • 17bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 506Homo sapiens
Biosample type
  • 360cell line
  • 93tissue
  • 45in vitro differentiated cells
  • 8primary cell
Organ
  • 336liver
  • 51blood
  • 51bodily fluid
  • 36connective tissue
  • 19pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 7blood vessel
  • 7epithelium
  • 7vasculature
  • 6spleen
  • 5artery
  • 3embryo
  • 1brain
  • 1eye
Project
  • 506AMP
Genome assembly (visualization)
  • 479hg19
  • 441GRCh38
Lab
  • 478AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

506 results

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Clear Filters
ChIP-seq
cell line
HepG2296
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver36
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte18
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
cardiac fibroblast1
cardiac muscle cell1
epithelial cell of proximal tubule1
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