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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 233ChIP-seq
  • 11DNase-seq
  • 4RRBS
Assay category
  • 233DNA binding
  • 11DNA accessibility
  • 4DNA methylation
Target of assay
  • 98transcription factor
  • 82histone
  • 82histone modification
  • 53control
  • 44broad histone mark
  • 38narrow histone mark
  • 20RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 106November, 2017
  • 62August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 248fastq
  • 242bam
  • 199bigWig
  • 185bed narrowPeak
  • 133bigBed narrowPeak
  • 78bed broadPeak
  • 69bigBed broadPeak
  • 37bed bed3+
  • 25tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 241Homo sapiens
Biosample type
  • 105cell line
  • 57tissue
  • 44in vitro differentiated cells
  • 40primary cell
  • 2stem cell
Organ
  • 114liver
  • 52pancreas
  • 31epithelium
  • 20brain
  • 18embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 248AMP
Genome assembly (visualization)
  • 210hg19
  • 176GRCh38
Lab
  • 248AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

248 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2104
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast711
astrocyte of the cerebellum3
brain microvascular endothelial cell3
stem cell
hESC2
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