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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 680ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 680DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 343transcription factor
  • 209histone
  • 209histone modification
  • 126control
  • 110broad histone mark
  • 98narrow histone mark
  • 82recombinant protein
  • 66RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 273November, 2017
  • 171August, 2017
  • 90December, 2017
  • 76February, 2023
  • 48November, 2018
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 892fastq
  • 786bam
  • 676bigWig
  • 508bed narrowPeak
  • 367bigBed narrowPeak
  • 98tsv
  • 73bed broadPeak
  • 64bigBed broadPeak
  • 51bed bed3+
  • 25tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 903Homo sapiens
Biosample type
  • 316cell line
  • 276primary cell
  • 175tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 378liver
  • 257pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 799AMP
  • 111HPAP
Genome assembly (visualization)
  • 675hg19
  • 625GRCh38
  • 5hg18
Lab
  • 799AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 42inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

910 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2301
GM1287815
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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