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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1004ChIP-seq
Assay category
  • 1004DNA binding
Target of assay
  • 1004histone modification
  • 1003histone
  • 512transcription factor
  • 506narrow histone mark
  • 496broad histone mark
  • 342control
  • 112RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 196October, 2019
  • 192August, 2017
  • 140May, 2021
  • 92May, 2019
  • 82November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 12October, 2017
  • 10November, 2019
  • 7January, 2019
  • 3March, 2020
Available data
  • 856bigWig
  • 838bed narrowPeak
  • 772bam
  • 378bigBed narrowPeak
  • 308tagAlign
  • 217fastq
  • 52bed broadPeak
  • 25bed bed3+
  • 17bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 998Homo sapiens
Biosample type
  • 628tissue
  • 230primary cell
  • 112in vitro differentiated cells
  • 32cell line
  • 2stem cell
Organ
  • 187brain
  • 151pancreas
  • 97heart
  • 97liver
  • 93epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 916AMP
  • 88T1D
Genome assembly (visualization)
  • 791GRCh38
  • 771hg19
Lab
  • 832AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

1004 results

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Clear Filters
ChIP-seq
tissue
liver65
islet of Langerhans51
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
EndoC_BH112
HepG212
Panc17
GM128781
stem cell
hESC2
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