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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 10DNase-seq
Assay category
  • 129DNA binding
  • 10DNA accessibility
Target of assay
  • 55histone
  • 55histone modification
  • 49transcription factor
  • 29narrow histone mark
  • 26broad histone mark
  • 25control
  • 16RNA binding protein
  • 12chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 55November, 2017
  • 33August, 2017
  • 23December, 2017
  • 14November, 2018
  • 8October, 2017
  • 6September, 2017
Available data
  • 139fastq
  • 138bam
  • 119bigWig
  • 112bed narrowPeak
  • 84bigBed narrowPeak
  • 40bed broadPeak
  • 36bed bed3+
  • 31bigBed broadPeak
  • 23tagAlign
Organism
  • 132Homo sapiens
Biosample type
  • 51cell line
  • 49tissue
  • 22in vitro differentiated cells
  • 15primary cell
  • 2stem cell
Organ
  • 57liver
  • 29pancreas
  • 19brain
  • 9embryo
  • 9epithelium
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 1spleen
Project
  • 139AMP
Genome assembly (visualization)
  • 126hg19
  • 110GRCh38
Lab
  • 139AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

139 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG251
tissue
islet of Langerhans17
brain82
pancreas10
liver32
adipose tissue2
in vitro differentiated cells
pancreatic endoderm6
Posterior foregut4
definitive endodermal cell4
primitive gut cell4
Hepatic endoderm3
primary cell
skeletal muscle myoblast6
astrocyte of the cerebellum3
brain microvascular endothelial cell3
choroid plexus epithelial cell3
stem cell
hESC2
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