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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 568ChIP-seq
  • 102single cell RNA-seq
  • 98total RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 568DNA binding
  • 200Transcription
  • 6DNA methylation
  • 5DNA accessibility
Target of assay
  • 293transcription factor
  • 175histone
  • 175histone modification
  • 98control
  • 91broad histone mark
  • 83narrow histone mark
  • 82recombinant protein
  • 61RNA binding protein
  • 20chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 222November, 2017
  • 136August, 2017
  • 87December, 2017
  • 76February, 2023
  • 46November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 16January, 2019
  • 9October, 2017
  • 6February, 2018
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 766fastq
  • 665bam
  • 579bigWig
  • 429bed narrowPeak
  • 318bigBed narrowPeak
  • 89tsv
  • 48bed bed3+
  • 35bed broadPeak
  • 26bigBed broadPeak
  • 23tagAlign
  • 19zippedFastqFolder
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 777Homo sapiens
Biosample type
  • 262cell line
  • 247primary cell
  • 165tissue
  • 106in vitro differentiated cells
  • 4stem cell
Organ
  • 321liver
  • 228pancreas
  • 155epithelium
  • 74connective tissue
  • 19brain
  • 18adipose tissue
  • 15embryo
  • 14blood
  • 14bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
Project
  • 673AMP
  • 111HPAP
Genome assembly (visualization)
  • 574hg19
  • 542GRCh38
  • 5hg18
Lab
  • 673AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 80missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

784 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
GRO-seq
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2248
GM1287814
primary cell
pancreatic alpha cell1042
exocrine cell39
pancreatic endocrine cell23
pancreatic beta cell1011
pancreatic ductal cell137
tissue
liver511
islet of Langerhans25611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
hepatocyte15
pancreatic endoderm911
definitive endodermal cell511
primitive gut cell511
stem cell
hESC31
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