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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 258ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 5ATAC-seq
  • 4DNase-seq
  • 2RRBS
  • 1FAIRE-seq
Assay category
  • 258DNA binding
  • 89Transcription
  • 11DNA methylation
  • 10DNA accessibility
Target of assay
  • 175histone modification
  • 174histone
  • 97broad histone mark
  • 76narrow histone mark
  • 46transcription factor
  • 37control
  • 7RNA binding protein
  • 3chromatin remodeller
Date released
  • 715February, 2021
  • 399May, 2021
  • 368August, 2017
  • 347November, 2017
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 91December, 2017
  • 86November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 35December, 2018
  • 29January, 2019
  • 25February, 2020
  • 22October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 6February, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 245bigWig
  • 244fastq
  • 243bam
  • 119bed narrowPeak
  • 89tsv
  • 76tagAlign
  • 33bigBed narrowPeak
  • 32bed broadPeak
  • 30bed bed3+
  • 6bigBed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
Organism
  • 361Homo sapiens
Biosample type
  • 278tissue
  • 68in vitro differentiated cells
  • 22primary cell
Organ
  • 159pancreas
  • 125connective tissue
  • 57adipose tissue
  • 53liver
  • 24musculature of body
  • 3epithelium
Project
  • 368AMP
Genome assembly (visualization)
  • 245hg19
  • 224GRCh38
Lab
  • 368AMP-T2D consortium
Audit category:
  • 36missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

368 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans398911
liver483
subcutaneous abdominal adipose tissue363
skeletal muscle tissue222
pancreas14
in vitro differentiated cells
adipocyte671
primary cell
pancreatic endocrine cell12
skeletal muscle myoblast61
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
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