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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 488ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2STARR-seq
  • 1RRBS
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 488DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 287transcription factor
  • 102control
  • 96histone modification
  • 95histone
  • 82recombinant protein
  • 57narrow histone mark
  • 52RNA binding protein
  • 38broad histone mark
  • 18chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 256November, 2017
  • 194May, 2020
  • 60December, 2017
  • 53August, 2017
  • 51November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 618bam
  • 561bigWig
  • 400fastq
  • 386bed narrowPeak
  • 303bigBed narrowPeak
  • 174tsv
  • 79tagAlign
  • 19bed broadPeak
  • 19bigBed broadPeak
  • 13bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 726Homo sapiens
Biosample type
  • 357tissue
  • 340cell line
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 917pancreas
  • 726liver
  • 684connective tissue
  • 498epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 68blood
  • 68bodily fluid
  • 61eye
  • 43nerve
  • 25embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 726AMP
Genome assembly (visualization)
  • 563hg19
  • 484GRCh38
Lab
  • 655AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

726 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver14216720231111
right lobe of liver1031212
cell line
HepG231714112221
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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