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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 677ChIP-seq
  • 241total RNA-seq
  • 195ATAC-seq
  • 95single cell RNA-seq
  • 49pCHi-C
  • 48DNase-seq
  • 19Hi-C
  • 15RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 677DNA binding
  • 347Transcription
  • 259DNA accessibility
  • 24DNA methylation
  • 193D chromatin structure
Target of assay
  • 368transcription factor
  • 244histone
  • 244histone modification
  • 146narrow histone mark
  • 98broad histone mark
  • 88recombinant protein
  • 75RNA binding protein
  • 68control
  • 27chromatin remodeller
  • 5nucleotide modification
  • 1other context
  • 1other post-translational modification
Date released
  • 236November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 62June, 2019
  • 62November, 2018
  • 60July, 2019
  • 59December, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 38August, 2017
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 20January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 1081bam
  • 1004bigWig
  • 664bed narrowPeak
  • 547fastq
  • 465bigBed narrowPeak
  • 371tsv
  • 126tagAlign
  • 104bed bed3+
  • 72bed broadPeak
  • 70bigBed broadPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1396Homo sapiens
Biosample type
  • 464primary cell
  • 401cell line
  • 344tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 361liver
  • 197pancreas
  • 168epithelium
  • 96brain
  • 68connective tissue
  • 58kidney
  • 57blood
  • 57bodily fluid
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 20musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1225AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1080hg19
  • 946GRCh38
Lab
  • 1178AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 134inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 23missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1396 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
pancreatic alpha cell1116
cell line
HepG2274512112
GM1287855
EndoC_BH122263
Panc11111
H1-hESC8
tissue
islet of Langerhans191037612134
liver393111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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