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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 477ChIP-seq
Assay category
  • 477DNA binding
Target of assay
  • 970histone modification
  • 969histone
  • 491narrow histone mark
  • 477broad histone mark
  • 462transcription factor
  • 314control
  • 107RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 97August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 46November, 2017
  • 37April, 2019
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 9August, 2021
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 403bigWig
  • 398bed narrowPeak
  • 354bam
  • 234bigBed narrowPeak
  • 138tagAlign
  • 94fastq
  • 27bed broadPeak
  • 11bed bed3+
  • 7bigBed broadPeak
Organism
  • 473Homo sapiens
Biosample type
  • 302tissue
  • 111primary cell
  • 48in vitro differentiated cells
  • 15cell line
  • 1stem cell
Organ
  • 71pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 38epithelium
  • 38liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4spleen
  • 1embryo
Project
  • 433AMP
  • 44T1D
Genome assembly (visualization)
  • 369GRCh38
  • 347hg19
Lab
  • 382AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

477 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell10
hepatocyte7
neural progenitor cell7
Posterior foregut1
cell line
EndoC_BH16
HepG25
Panc14
stem cell
hESC1
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