Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 31ChIP-seq
Assay category
  • 31DNA binding
Target of assay
  • 970histone modification
  • 969histone
  • 491narrow histone mark
  • 477broad histone mark
  • 462transcription factor
  • 314control
  • 107RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 10November, 2017
  • 7November, 2018
  • 6January, 2019
  • 3August, 2017
  • 3December, 2017
  • 2December, 2018
Available data
  • 31bam
  • 31bed narrowPeak
  • 31bigWig
  • 31fastq
  • 29bigBed narrowPeak
  • 2bed broadPeak
  • 2bigBed broadPeak
Organism
  • 31Homo sapiens
Biosample type
  • 25cell line
  • 3in vitro differentiated cells
  • 2tissue
  • 1primary cell
Organ
  • 18liver
  • 10blood
  • 10bodily fluid
  • 2connective tissue
  • 1epithelium
Project
  • 31AMP
Genome assembly (visualization)
  • 31hg19
  • 29GRCh38
Lab
  • 31AMP-T2D consortium
Audit category:
  • 3inconsistent control
Audit category:
  • 6missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

31 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG215
GM1287810
in vitro differentiated cells
adipocyte2
hepatocyte1
tissue
liver2
primary cell
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego