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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 306ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 306DNA binding
  • 3Transcription
Target of assay
  • 970histone modification
  • 969histone
  • 491narrow histone mark
  • 477broad histone mark
  • 462transcription factor
  • 314control
  • 107RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 66November, 2017
  • 39October, 2019
  • 37August, 2017
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 20December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3January, 2019
  • 3July, 2019
  • 2November, 2019
  • 2October, 2017
Available data
  • 277bam
  • 139fastq
  • 67tagAlign
  • 18bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 313Homo sapiens
Biosample type
  • 185tissue
  • 77cell line
  • 29in vitro differentiated cells
  • 22primary cell
  • 1stem cell
Organ
  • 102liver
  • 41pancreas
  • 35connective tissue
  • 30brain
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 18epithelium
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6musculature of body
  • 5blood
  • 5bodily fluid
  • 4embryo
  • 2vein
  • 1eye
Project
  • 314AMP
Genome assembly (visualization)
  • 27hg19
  • 12GRCh38
Lab
  • 297AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

314 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver42
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG255
Panc16
EndoC_BH123
GM128785
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
embryonic stem cell5
Hepatic endoderm2
pancreatic endoderm2
primary cell
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
endothelial cell of umbilical vein2
epithelial cell of proximal tubule2
stem cell
hESC1
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