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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 462ChIP-seq
Assay category
  • 462DNA binding
Target of assay
  • 970histone modification
  • 969histone
  • 491narrow histone mark
  • 477broad histone mark
  • 462transcription factor
  • 314control
  • 107RNA binding protein
  • 89recombinant protein
  • 31chromatin remodeller
  • 5nucleotide modification
  • 4other context
  • 4other post-translational modification
Date released
  • 197November, 2017
  • 62November, 2018
  • 46August, 2017
  • 40December, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 445bigWig
  • 434bam
  • 419bed narrowPeak
  • 402fastq
  • 355bigBed narrowPeak
  • 18bed bed3+
  • 12bed broadPeak
  • 12bigBed broadPeak
  • 9tagAlign
  • 3tar
Organism
  • 462Homo sapiens
Biosample type
  • 312cell line
  • 91tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 287liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 18pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 462AMP
Genome assembly (visualization)
  • 436hg19
  • 405GRCh38
Lab
  • 434AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 34missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

462 results

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Clear Filters
ChIP-seq
cell line
HepG2248
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver35
white adipose tissue12
body of pancreas9
islet of Langerhans6
spleen6
in vitro differentiated cells
adipocyte22
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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