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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ChIP-seq
  • 28single cell RNA-seq
  • 23ATAC-seq
  • 23total RNA-seq
  • 11WGBS
Assay category
  • 75DNA binding
  • 51Transcription
  • 23DNA accessibility
  • 11DNA methylation
Target of assay
  • 54transcription factor
  • 18control
  • 12RNA binding protein
  • 1chromatin remodeller
Date released
  • 29December, 2018
  • 24May, 2022
  • 20October, 2018
  • 18September, 2020
  • 17April, 2018
  • 9November, 2017
  • 8July, 2018
  • 8November, 2018
  • 6August, 2017
  • 6February, 2021
  • 6January, 2019
  • 4December, 2017
  • 3October, 2017
  • 1February, 2018
  • 1June, 2018
Available data
  • 158fastq
  • 134bam
  • 92bigWig
  • 80bed narrowPeak
  • 59bigBed narrowPeak
  • 33tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2zippedFastqFolder
Organism
  • 160Homo sapiens
Biosample type
  • 65tissue
  • 50primary cell
  • 44cell line
  • 1in vitro differentiated cells
Organ
  • 77pancreas
  • 40epithelium
  • 34blood
  • 34bodily fluid
  • 16liver
  • 14adipose tissue
  • 14connective tissue
  • 8spleen
Project
  • 136AMP
  • 24HPAP
Genome assembly (visualization)
  • 107hg19
  • 92GRCh38
Lab
  • 112AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

160 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
tissue
islet of Langerhans186
body of pancreas111
spleen71
omental fat pad61
right lobe of liver41
primary cell
pancreatic alpha cell4156
pancreatic beta cell41
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
cell line
GM1287834
HepG210
in vitro differentiated cells
endocrine cell1
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