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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 226ChIP-seq
  • 7DNase-seq
  • 4RRBS
Assay category
  • 226DNA binding
  • 7DNA accessibility
  • 4DNA methylation
Target of assay
  • 97transcription factor
  • 82histone
  • 82histone modification
  • 47control
  • 42narrow histone mark
  • 40broad histone mark
  • 20RNA binding protein
  • 14chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 109November, 2017
  • 56August, 2017
  • 26December, 2017
  • 22February, 2018
  • 13November, 2018
  • 6September, 2017
  • 5October, 2017
Available data
  • 237fastq
  • 231bam
  • 194bigWig
  • 180bed narrowPeak
  • 128bigBed narrowPeak
  • 81bed broadPeak
  • 78bigBed broadPeak
  • 35bed bed3+
  • 28tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 236Homo sapiens
Biosample type
  • 106cell line
  • 46primary cell
  • 43in vitro differentiated cells
  • 40tissue
  • 2stem cell
Organ
  • 115liver
  • 43pancreas
  • 31epithelium
  • 18embryo
  • 15brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
  • 1adipose tissue
  • 1connective tissue
  • 1spleen
Project
  • 237AMP
Genome assembly (visualization)
  • 205hg19
  • 171GRCh38
Lab
  • 237AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

237 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2106
primary cell
skeletal muscle myoblast141
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
tissue
islet of Langerhans18
liver611
brain51
body of pancreas2
skeletal muscle tissue2
stem cell
hESC2
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