Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 49ATAC-seq
  • 20ChIP-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 66DNA accessibility
  • 20DNA binding
  • 1Transcription
Target of assay
  • 9transcription factor
  • 7histone
  • 7histone modification
  • 5broad histone mark
  • 4control
  • 2narrow histone mark
Date released
  • 39May, 2022
  • 16February, 2021
  • 13December, 2017
  • 10August, 2017
  • 5January, 2018
  • 5September, 2017
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 52fastq
  • 40zippedFastqFolder
  • 31bam
  • 31bigWig
  • 25bed narrowPeak
  • 9bed bed3+
  • 9bigBed narrowPeak
  • 1bed broadPeak
Organism
  • 92Homo sapiens
Biosample type
  • 64primary cell
  • 18in vitro differentiated cells
  • 7tissue
  • 3stem cell
Organ
  • 51pancreas
  • 48epithelium
  • 6embryo
  • 3connective tissue
  • 2liver
  • 1brain
Project
  • 56HPAP
  • 36AMP
Genome assembly (visualization)
  • 25GRCh38
  • 25hg19
  • 5hg18
Lab
  • 56Klaus Kaestner, Upenn
  • 35AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
  • 1inconsistent ontology term
Audit category:
  • 13inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

92 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
GRO-seq
FAIRE-seq
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
in vitro differentiated cells
pancreatic endoderm41
Posterior foregut21
adipocyte3
definitive endodermal cell21
primitive gut cell21
tissue
islet of Langerhans12
liver2
cerebellum (Hemisphere)1
pancreas1
stem cell
hESC21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego