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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 92DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 65histone
  • 65histone modification
  • 37broad histone mark
  • 28narrow histone mark
  • 18transcription factor
  • 12RNA binding protein
  • 10chromatin remodeller
  • 9control
Date released
  • 31August, 2017
  • 21December, 2017
  • 21October, 2018
  • 12January, 2019
  • 7August, 2020
  • 4September, 2020
  • 3November, 2018
  • 2December, 2018
  • 2November, 2017
Available data
  • 102fastq
  • 93bigWig
  • 92bam
  • 83bed narrowPeak
  • 53bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 103Homo sapiens
Biosample type
  • 46in vitro differentiated cells
  • 34tissue
  • 12cell line
  • 11primary cell
Organ
  • 32connective tissue
  • 30pancreas
  • 25epithelium
  • 23liver
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 1adipose tissue
Project
  • 92AMP
  • 11HPAP
Genome assembly (visualization)
  • 93GRCh38
  • 83hg19
Lab
  • 92AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

103 results

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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte31
hepatocyte15
tissue
body of pancreas20
spleen7
right lobe of liver6
omental fat pad1
cell line
GM1287810
HepG22
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
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