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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 91ChIP-seq
  • 85single cell RNA-seq
  • 81ATAC-seq
  • 52WGBS
  • 48snATAC-seq
  • 8total RNA-seq
  • 7DNase-seq
  • 1pCHi-C
Assay category
  • 136DNA accessibility
  • 93Transcription
  • 91DNA binding
  • 52DNA methylation
Target of assay
  • 63transcription factor
  • 19control
  • 15RNA binding protein
  • 9chromatin remodeller
  • 6histone modification
  • 5histone
  • 3narrow histone mark
  • 2broad histone mark
Date released
  • 158May, 2022
  • 45February, 2021
  • 29December, 2018
  • 25September, 2020
  • 24November, 2018
  • 20October, 2018
  • 14November, 2017
  • 12August, 2017
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 6January, 2019
  • 5September, 2017
  • 4December, 2017
  • 3October, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 239fastq
  • 159bam
  • 135zippedFastqFolder
  • 125bigWig
  • 110bed narrowPeak
  • 83bigBed narrowPeak
  • 24tsv
  • 8bed broadPeak
  • 7bed bed3+
  • 7bigBed broadPeak
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 373Homo sapiens
Biosample type
  • 237primary cell
  • 81tissue
  • 54cell line
  • 1in vitro differentiated cells
Organ
  • 158pancreas
  • 115epithelium
  • 34blood
  • 34bodily fluid
  • 34liver
  • 13adipose tissue
  • 13connective tissue
  • 11spleen
  • 1brain
Project
  • 211HPAP
  • 162AMP
Genome assembly (visualization)
  • 128hg19
  • 123GRCh38
Lab
  • 211Klaus Kaestner, Upenn
  • 137AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

373 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
total RNA-seq
DNase-seq
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell33231
pancreatic beta cell21916
pancreatic acinar cell26
pancreatic cell5
tissue
islet of Langerhans198
body of pancreas11122
spleen7121
liver71
omental fat pad611
cell line
GM1287834
HepG2191
in vitro differentiated cells
white fat cell1
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