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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
85
single cell RNA-seq
81
ATAC-seq
48
snATAC-seq
8
total RNA-seq
7
DNase-seq
5
WGBS
1
pCHi-C
Assay category
136
DNA accessibility
93
Transcription
91
DNA binding
5
DNA methylation
Target of assay
63
transcription factor
19
control
15
RNA binding protein
9
chromatin remodeller
6
histone modification
5
histone
3
narrow histone mark
2
broad histone mark
Date released
117
May, 2022
39
February, 2021
29
December, 2018
25
September, 2020
24
November, 2018
20
October, 2018
14
November, 2017
12
August, 2017
9
July, 2018
7
April, 2018
7
August, 2020
6
January, 2019
5
September, 2017
4
December, 2017
3
October, 2017
2
August, 2018
1
June, 2018
1
March, 2019
1
September, 2018
Available data
233
fastq
159
bam
125
bigWig
110
bed narrowPeak
94
zippedFastqFolder
83
bigBed narrowPeak
18
tsv
8
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
326
Homo sapiens
Biosample type
190
primary cell
81
tissue
54
cell line
1
in vitro differentiated cells
Organ
111
pancreas
68
epithelium
34
blood
34
bodily fluid
34
liver
13
adipose tissue
13
connective tissue
11
spleen
1
brain
Project
164
HPAP
162
AMP
Genome assembly (visualization)
128
hg19
123
GRCh38
Lab
164
Klaus Kaestner, Upenn
137
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
8
inconsistent control run_type
7
inconsistent control read length
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
326 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
3
32
pancreatic beta cell
2
19
pancreatic acinar cell
2
6
pancreatic cell
5
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tissue
islet of Langerhans
19
8
body of pancreas
11
1
2
2
spleen
7
1
1
2
liver
7
1
omental fat pad
6
1
1
+ See 3 more…
cell line
GM12878
34
HepG2
19
1
in vitro differentiated cells
white fat cell
1
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