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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 391ChIP-seq
  • 93total RNA-seq
  • 75single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1ATAC-seq
  • 1DNase-seq
Assay category
  • 391DNA binding
  • 168Transcription
  • 10DNA methylation
  • 4DNA accessibility
Target of assay
  • 162transcription factor
  • 156histone
  • 156histone modification
  • 78broad histone mark
  • 77narrow histone mark
  • 73control
  • 48RNA binding protein
  • 18chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 138November, 2017
  • 125August, 2017
  • 76February, 2023
  • 55December, 2017
  • 37April, 2018
  • 35September, 2020
  • 25February, 2018
  • 23October, 2018
  • 17July, 2018
  • 14November, 2018
  • 12January, 2019
  • 6October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 560fastq
  • 454bam
  • 401bigWig
  • 308bed narrowPeak
  • 200bigBed narrowPeak
  • 74bed broadPeak
  • 71bigBed broadPeak
  • 57tsv
  • 38bed bed3+
  • 28tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 577Homo sapiens
Biosample type
  • 211primary cell
  • 147cell line
  • 123in vitro differentiated cells
  • 93tissue
  • 4stem cell
Organ
  • 175pancreas
  • 170liver
  • 145epithelium
  • 56connective tissue
  • 23embryo
  • 15brain
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 6vasculature
  • 4adipose tissue
  • 3blood vessel
  • 2musculature of body
Project
  • 467AMP
  • 111HPAP
Genome assembly (visualization)
  • 402hg19
  • 353GRCh38
  • 5hg18
Lab
  • 467AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 20missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

578 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell13429
exocrine cell39
pancreatic beta cell13118
Langerhans cell19
skeletal muscle myoblast141
cell line
HepG2137
GM1287810
in vitro differentiated cells
adipocyte51
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
primitive gut cell81
tissue
islet of Langerhans22611
body of pancreas20
liver1011
spleen7
pancreas321
stem cell
hESC31
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