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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22ChIP-seq
  • 7DNase-seq
  • 7WGBS
  • 1FAIRE-seq
  • 1single cell RNA-seq
Assay category
  • 22DNA binding
  • 8DNA accessibility
  • 7DNA methylation
  • 1Transcription
Target of assay
  • 20transcription factor
  • 10RNA binding protein
  • 6chromatin remodeller
  • 2control
Date released
  • 715February, 2021
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 261August, 2017
  • 233November, 2017
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 143July, 2018
  • 120May, 2019
  • 108July, 2019
  • 80April, 2019
  • 64March, 2020
  • 61November, 2019
  • 59December, 2017
  • 59October, 2018
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 38November, 2018
  • 31December, 2018
  • 25February, 2018
  • 25February, 2020
  • 19April, 2020
  • 18January, 2019
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 15October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4October, 2022
  • 3August, 2018
  • 2June, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 38fastq
  • 37bam
  • 35bigWig
  • 28bed narrowPeak
  • 28bigBed narrowPeak
  • 7bed bed3+
  • 7bed bedMethyl
  • 7bed broadPeak
  • 7bigBed bedMethyl
  • 7bigBed broadPeak
  • 1csv
Organism
  • 38Homo sapiens
Biosample type
  • 23cell line
  • 14tissue
  • 1primary cell
Organ
  • 16liver
  • 9blood
  • 9bodily fluid
  • 7pancreas
  • 3spleen
  • 1adipose tissue
  • 1brain
  • 1connective tissue
Project
  • 38AMP
Genome assembly (visualization)
  • 34GRCh38
  • 28hg19
Lab
  • 38AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 4inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

38 results

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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2131
GM128789
tissue
body of pancreas22
pancreas21
spleen12
brain1
liver1
primary cell
pancreatic cell1
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