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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
46
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
46
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
386
February, 2021
43
August, 2017
12
July, 2019
10
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
415
bam
410
bigWig
401
tsv
17
fastq
10
bed narrowPeak
8
tagAlign
7
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
463
Homo sapiens
Biosample type
461
tissue
2
primary cell
1
in vitro differentiated cells
Organ
727
pancreas
652
connective tissue
529
liver
464
adipose tissue
446
epithelium
393
heart
354
kidney
281
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
53
blood
53
bodily fluid
43
nerve
33
embryo
22
vein
20
lung
19
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
464
AMP
Genome assembly (visualization)
411
hg19
409
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
464 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous abdominal adipose tissue
36
3
omental fat pad
5
7
1
1
2
subcutaneous adipose tissue
7
3
1
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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