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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 124ChIP-seq
  • 25ATAC-seq
  • 8DNase-seq
  • 6WGBS
  • 5pCHi-C
  • 3small RNA-seq
  • 2Capture-C
  • 2single cell RNA-seq
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 479Transcription
  • 124DNA binding
  • 33DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 77histone
  • 77histone modification
  • 44broad histone mark
  • 32narrow histone mark
  • 25transcription factor
  • 22control
  • 8RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 108August, 2017
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 10October, 2018
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 561bam
  • 551bigWig
  • 476tsv
  • 70bed narrowPeak
  • 69fastq
  • 24bigBed narrowPeak
  • 22tagAlign
  • 21bed bed3+
  • 9bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 651Homo sapiens
Biosample type
  • 520tissue
  • 94in vitro differentiated cells
  • 37primary cell
  • 1stem cell
Organ
  • 727pancreas
  • 652connective tissue
  • 529liver
  • 464adipose tissue
  • 446epithelium
  • 393heart
  • 354kidney
  • 281brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 53blood
  • 53bodily fluid
  • 43nerve
  • 33embryo
  • 22vein
  • 20lung
  • 19spleen
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 651AMP
  • 1T1D
Genome assembly (visualization)
  • 569hg19
  • 546GRCh38
Lab
  • 647AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 6inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

652 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Capture-C
single cell RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue382331
bone tissue58
subcutaneous abdominal adipose tissue363
omental fat pad57121
subcutaneous adipose tissue73111
in vitro differentiated cells
adipocyte56581
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
brain pericyte11
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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