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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
297
ChIP-seq
184
total RNA-seq
23
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
297
DNA binding
188
Transcription
28
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
145
transcription factor
95
histone modification
94
histone
58
narrow histone mark
56
control
37
RNA binding protein
36
broad histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
142
November, 2017
43
August, 2017
40
May, 2022
35
August, 2021
28
December, 2017
16
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
Available data
420
bam
416
bigWig
245
bed narrowPeak
203
fastq
169
tsv
165
bigBed narrowPeak
85
tagAlign
56
bed broadPeak
56
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
529
Homo sapiens
Biosample type
310
tissue
190
cell line
15
in vitro differentiated cells
14
primary cell
Organ
727
pancreas
652
connective tissue
529
liver
464
adipose tissue
446
epithelium
393
heart
354
kidney
281
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
53
blood
53
bodily fluid
43
nerve
33
embryo
22
vein
20
lung
19
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
529
AMP
Genome assembly (visualization)
422
hg19
330
GRCh38
Lab
458
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
95
167
20
1
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
173
9
1
1
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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