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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 297ChIP-seq
  • 184total RNA-seq
  • 23ATAC-seq
  • 5DNase-seq
  • 5WGBS
  • 3Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 297DNA binding
  • 188Transcription
  • 28DNA accessibility
  • 7DNA methylation
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 145transcription factor
  • 95histone modification
  • 94histone
  • 58narrow histone mark
  • 56control
  • 37RNA binding protein
  • 36broad histone mark
  • 15chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 194May, 2020
  • 142November, 2017
  • 43August, 2017
  • 40May, 2022
  • 35August, 2021
  • 28December, 2017
  • 16November, 2018
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1February, 2020
Available data
  • 420bam
  • 416bigWig
  • 245bed narrowPeak
  • 203fastq
  • 169tsv
  • 165bigBed narrowPeak
  • 85tagAlign
  • 56bed broadPeak
  • 56bigBed broadPeak
  • 12bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 529Homo sapiens
Biosample type
  • 310tissue
  • 190cell line
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 727pancreas
  • 652connective tissue
  • 529liver
  • 464adipose tissue
  • 446epithelium
  • 393heart
  • 354kidney
  • 281brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 53blood
  • 53bodily fluid
  • 43nerve
  • 33embryo
  • 22vein
  • 20lung
  • 19spleen
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 529AMP
Genome assembly (visualization)
  • 422hg19
  • 330GRCh38
Lab
  • 458AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

529 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver95167201311111
right lobe of liver1031212
cell line
HepG21739111221
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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