Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1494ChIP-seq
  • 513ATAC-seq
  • 208DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 63total RNA-seq
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1494DNA binding
  • 809DNA accessibility
  • 97DNA methylation
  • 66Transcription
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 947histone modification
  • 946histone
  • 482narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 262control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 288October, 2019
  • 260August, 2017
  • 233November, 2017
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 133August, 2021
  • 120May, 2019
  • 110February, 2023
  • 80April, 2019
  • 66February, 2021
  • 59December, 2017
  • 59July, 2019
  • 59October, 2018
  • 49March, 2020
  • 41November, 2019
  • 40May, 2024
  • 37November, 2018
  • 31December, 2018
  • 24February, 2018
  • 18January, 2019
  • 16January, 2021
  • 15October, 2017
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1654bam
  • 1533bed narrowPeak
  • 1513bigWig
  • 797bigBed narrowPeak
  • 581fastq
  • 386tagAlign
  • 304bed broadPeak
  • 275bigBed broadPeak
  • 257bed bed3+
  • 117tsv
  • 64xls
  • 60zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2571Homo sapiens
Biosample type
  • 1344tissue
  • 654primary cell
  • 312cell line
  • 253in vitro differentiated cells
  • 8stem cell
Organ
  • 372pancreas
  • 339liver
  • 260brain
  • 238epithelium
  • 231heart
  • 226kidney
  • 178connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 88musculature of body
  • 85artery
  • 63adipose tissue
  • 53blood
  • 53bodily fluid
  • 42eye
  • 42nerve
  • 23embryo
  • 22vein
  • 19spleen
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2230AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1558hg19
  • 1477GRCh38
  • 5hg18
Lab
  • 1966AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 127inconsistent ontology term
  • 33audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2571 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans6567174311
kidney2775136111
liver952013111
heart left ventricle35234111
coronary artery5362
primary cell
monocyte8515211
pancreatic alpha cell1332311
pancreatic beta cell1319161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG217311211
GM12878441
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte6581
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego