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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 515ChIP-seq
  • 235total RNA-seq
  • 194ATAC-seq
  • 72single cell RNA-seq
  • 49pCHi-C
  • 46DNase-seq
  • 19RRBS
  • 18Hi-C
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4FAIRE-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 515DNA binding
  • 318Transcription
  • 256DNA accessibility
  • 28DNA methylation
  • 183D chromatin structure
Target of assay
  • 258histone
  • 258histone modification
  • 206transcription factor
  • 151narrow histone mark
  • 107broad histone mark
  • 59RNA binding protein
  • 56control
  • 23chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 148May, 2021
  • 144May, 2020
  • 144November, 2017
  • 124October, 2019
  • 66August, 2021
  • 62June, 2019
  • 60July, 2019
  • 53February, 2023
  • 48March, 2020
  • 43February, 2021
  • 41August, 2017
  • 39April, 2018
  • 35December, 2017
  • 25February, 2020
  • 24December, 2018
  • 24November, 2019
  • 23July, 2018
  • 22November, 2018
  • 14May, 2019
  • 11January, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 6October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3October, 2022
  • 2April, 2019
  • 2August, 2018
  • 2May, 2022
  • 2September, 2017
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 887bam
  • 828bigWig
  • 523bed narrowPeak
  • 356fastq
  • 342tsv
  • 325bigBed narrowPeak
  • 141tagAlign
  • 115bed broadPeak
  • 114bigBed broadPeak
  • 94bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1205Homo sapiens
Biosample type
  • 451primary cell
  • 310tissue
  • 261cell line
  • 179in vitro differentiated cells
  • 4stem cell
Organ
  • 206liver
  • 176pancreas
  • 155epithelium
  • 96brain
  • 59connective tissue
  • 58kidney
  • 49vasculature
  • 44blood
  • 44blood vessel
  • 44bodily fluid
  • 41heart
  • 22musculature of body
  • 19vein
  • 13adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1034AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 910hg19
  • 759GRCh38
Lab
  • 988AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 130inconsistent ontology term
  • 6audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 16missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1205 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
FAIRE-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
pancreatic alpha cell1016
tissue
islet of Langerhans161036611234
liver113111
brain111121
heart531411
kidney12141
cell line
HepG21531212
GM1287842
EndoC_BH122263
Panc11111
H1-hESC8
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte5181
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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