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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 189total RNA-seq
  • 169ChIP-seq
  • 104ATAC-seq
  • 66single cell RNA-seq
  • 28pCHi-C
  • 26DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 266Transcription
  • 169DNA binding
  • 138DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 132histone
  • 132histone modification
  • 89narrow histone mark
  • 43broad histone mark
  • 23transcription factor
  • 16control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 48August, 2021
  • 47February, 2023
  • 39April, 2018
  • 36July, 2019
  • 32March, 2020
  • 30June, 2019
  • 25February, 2020
  • 22July, 2018
  • 21August, 2017
  • 11February, 2021
  • 6October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 3October, 2022
  • 2August, 2018
  • 2January, 2021
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1June, 2018
  • 1March, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 446bam
  • 430bigWig
  • 278tsv
  • 171bed narrowPeak
  • 116tagAlign
  • 91fastq
  • 55bed bed3+
  • 39bigBed narrowPeak
  • 24bed broadPeak
  • 23bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 619Homo sapiens
Biosample type
  • 279primary cell
  • 230tissue
  • 109in vitro differentiated cells
  • 1stem cell
Organ
  • 113pancreas
  • 71brain
  • 67epithelium
  • 49connective tissue
  • 25heart
  • 19kidney
  • 15liver
  • 13adipose tissue
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 477AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 456hg19
  • 389GRCh38
Lab
  • 446AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 4missing controlled_by
Audit category:
  • 4inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

619 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
small RNA-seq
Hi-C
snATAC-seq
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell101
pancreatic beta cell91
pancreatic delta cell8
mesenchymal stem cell7
tissue
islet of Langerhans10161761224
liver2611
brain612
heart21411
frontal cortex2211
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
cardiomyocytes12
adipocyte1541
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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