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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 27ChIP-seq
Assay category
  • 27DNA binding
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 267control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 10November, 2017
  • 6November, 2018
  • 5January, 2019
  • 3August, 2017
  • 2December, 2018
  • 1December, 2017
Available data
  • 27bam
  • 27bed narrowPeak
  • 27bigWig
  • 27fastq
  • 25bigBed narrowPeak
  • 4bed broadPeak
  • 4bigBed broadPeak
Organism
  • 27Homo sapiens
Biosample type
  • 23cell line
  • 3in vitro differentiated cells
  • 1primary cell
Organ
  • 15liver
  • 9blood
  • 9bodily fluid
  • 2connective tissue
  • 1epithelium
Project
  • 27AMP
Genome assembly (visualization)
  • 27hg19
  • 25GRCh38
Lab
  • 27AMP-T2D consortium
Audit category:
  • 1inconsistent control
Audit category:
  • 6missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

27 results

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ChIP-seq
cell line
HepG214
GM128789
in vitro differentiated cells
adipocyte2
hepatocyte1
primary cell
skeletal muscle myoblast1
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