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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 259ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 259DNA binding
  • 3Transcription
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 267control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 42August, 2017
  • 39October, 2019
  • 31November, 2017
  • 23May, 2019
  • 23May, 2020
  • 17October, 2018
  • 14April, 2019
  • 13December, 2017
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3July, 2019
  • 2November, 2018
  • 2November, 2019
  • 2October, 2017
  • 1January, 2019
Available data
  • 230bam
  • 92fastq
  • 66tagAlign
  • 22bigWig
  • 8bed bed3+
  • 3tsv
Organism
  • 267Homo sapiens
Biosample type
  • 156tissue
  • 39cell line
  • 36in vitro differentiated cells
  • 35primary cell
  • 1stem cell
Organ
  • 56liver
  • 50pancreas
  • 30brain
  • 30epithelium
  • 22connective tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12adipose tissue
  • 12kidney
  • 11nerve
  • 9artery
  • 7embryo
  • 6musculature of body
  • 5spleen
  • 2blood
  • 2bodily fluid
  • 2vein
  • 1eye
Project
  • 267AMP
Genome assembly (visualization)
  • 30hg19
  • 11GRCh38
Lab
  • 250AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

267 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver31
islet of Langerhans132
tibial nerve11
body of pancreas8
heart left ventricle6
cell line
HepG220
Panc16
EndoC_BH123
GM128782
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte7
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm5
Hepatic endoderm2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
stem cell
hESC1
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