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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 948ChIP-seq
Assay category
  • 948DNA binding
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 267control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 196October, 2019
  • 166August, 2017
  • 140May, 2021
  • 92May, 2019
  • 87November, 2017
  • 60April, 2019
  • 35May, 2024
  • 31December, 2017
  • 30October, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 10November, 2019
  • 9October, 2017
  • 7January, 2019
  • 3March, 2020
Available data
  • 800bigWig
  • 795bed narrowPeak
  • 716bam
  • 370bigBed narrowPeak
  • 312tagAlign
  • 161fastq
  • 58bed broadPeak
  • 29bigBed broadPeak
  • 24bed bed3+
  • 1tagAlign bed3+
Organism
  • 947Homo sapiens
Biosample type
  • 605tissue
  • 192primary cell
  • 112in vitro differentiated cells
  • 37cell line
  • 2stem cell
Organ
  • 184brain
  • 97heart
  • 95liver
  • 95pancreas
  • 77connective tissue
  • 72epithelium
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 31adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 12embryo
  • 6spleen
  • 4gonad
  • 4ovary
  • 3eye
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 860AMP
  • 88T1D
Genome assembly (visualization)
  • 735GRCh38
  • 715hg19
Lab
  • 776AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

948 results

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Clear Filters
ChIP-seq
tissue
liver58
islet of Langerhans50
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
skeletal muscle myoblast11
epithelial cell of proximal tubule7
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
hepatocyte12
pancreatic endoderm10
cell line
HepG217
EndoC_BH112
Panc17
GM128781
stem cell
hESC2
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