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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 483ChIP-seq
Assay category
  • 483DNA binding
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 267control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 141October, 2019
  • 72August, 2017
  • 64May, 2021
  • 38November, 2017
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 409bigWig
  • 407bed narrowPeak
  • 374bam
  • 173tagAlign
  • 144bigBed narrowPeak
  • 79fastq
  • 28bed broadPeak
  • 14bigBed broadPeak
  • 12bed bed3+
  • 1tagAlign bed3+
Organism
  • 482Homo sapiens
Biosample type
  • 317tissue
  • 91primary cell
  • 55in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 117brain
  • 58liver
  • 46pancreas
  • 40heart
  • 38epithelium
  • 32connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 11adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 439AMP
  • 44T1D
Genome assembly (visualization)
  • 380hg19
  • 379GRCh38
Lab
  • 406AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 14inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

483 results

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Clear Filters
ChIP-seq
tissue
liver40
islet of Langerhans36
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
CD8-positive, alpha-beta T cell10
endothelial cell of umbilical vein6
skeletal muscle myoblast5
epithelial cell of proximal tubule4
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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