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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 285ChIP-seq
Assay category
  • 285DNA binding
Target of assay
  • 948histone modification
  • 947histone
  • 483narrow histone mark
  • 463broad histone mark
  • 285transcription factor
  • 267control
  • 88RNA binding protein
  • 27chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 29August, 2017
  • 25December, 2018
  • 20November, 2018
  • 16May, 2021
  • 15December, 2017
  • 12October, 2018
  • 11August, 2021
  • 10January, 2019
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 271bigWig
  • 265bed narrowPeak
  • 256bam
  • 225fastq
  • 202bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 9bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 285Homo sapiens
Biosample type
  • 187cell line
  • 48in vitro differentiated cells
  • 40tissue
  • 10primary cell
Organ
  • 145liver
  • 39blood
  • 39bodily fluid
  • 25connective tissue
  • 17heart
  • 13pancreas
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 5artery
  • 3adipose tissue
  • 3brain
  • 3embryo
  • 3spleen
  • 1eye
Project
  • 285AMP
Genome assembly (visualization)
  • 265hg19
  • 227GRCh38
Lab
  • 257AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 14inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 17missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

285 results

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Clear Filters
ChIP-seq
cell line
HepG2135
GM1287839
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
in vitro differentiated cells
adipocyte21
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
tissue
body of pancreas8
liver6
heart left ventricle5
left cardiac atrium5
omental fat pad3
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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