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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 213ChIP-seq
  • 9DNase-seq
  • 4RRBS
Assay category
  • 213DNA binding
  • 9DNA accessibility
  • 4DNA methylation
Target of assay
  • 86transcription factor
  • 80histone
  • 80histone modification
  • 47control
  • 44broad histone mark
  • 36narrow histone mark
  • 18RNA binding protein
  • 7chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 107November, 2017
  • 69August, 2017
  • 22February, 2018
  • 9November, 2018
  • 9October, 2017
  • 6September, 2017
  • 3December, 2017
  • 1January, 2019
Available data
  • 226fastq
  • 220bam
  • 185bigWig
  • 170bed narrowPeak
  • 134bigBed narrowPeak
  • 91bed broadPeak
  • 82bigBed broadPeak
  • 39tagAlign
  • 21bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 219Homo sapiens
Biosample type
  • 101cell line
  • 54tissue
  • 48primary cell
  • 23in vitro differentiated cells
Organ
  • 108liver
  • 52pancreas
  • 28epithelium
  • 19brain
  • 9embryo
  • 6vasculature
  • 4connective tissue
  • 3adipose tissue
  • 3blood vessel
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 226AMP
Genome assembly (visualization)
  • 191hg19
  • 157GRCh38
Lab
  • 226AMP-T2D consortium
Audit category:
  • 7missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

226 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2100
GM128781
tissue
islet of Langerhans18
brain91
pancreas10
liver511
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
in vitro differentiated cells
pancreatic endoderm9
embryonic stem cell3
endocrine cell3
posterior foregut3
primitive gut cell3
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