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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
47
ATAC-seq
16
snATAC-seq
5
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
113
DNA binding
64
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
70
transcription factor
35
control
12
recombinant protein
8
histone
8
histone modification
7
broad histone mark
3
chromatin remodeller
1
RNA binding protein
1
narrow histone mark
Date released
53
November, 2017
39
May, 2022
35
December, 2017
19
August, 2017
16
February, 2021
10
January, 2019
5
November, 2018
5
September, 2017
1
December, 2018
1
September, 2020
Available data
144
fastq
127
bam
92
bigWig
80
bed narrowPeak
76
bigBed narrowPeak
40
zippedFastqFolder
5
bed bed3+
5
tsv
4
bed broadPeak
4
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
64
cell line
64
primary cell
53
tissue
3
in vitro differentiated cells
Organ
105
liver
52
pancreas
47
epithelium
5
blood
5
bodily fluid
5
connective tissue
2
adipose tissue
Project
128
AMP
56
HPAP
Genome assembly (visualization)
92
hg19
86
GRCh38
Lab
128
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
27
inconsistent control
16
audit script error
Audit category:
2
missing controlled_by
Audit category:
9
inconsistent control read length
files.platform.term_name!
Illumina HiSeq 2500
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
53
5
1
GM12878
5
primary cell
pancreatic alpha cell
25
Langerhans cell
16
1
pancreatic beta cell
16
pancreatic acinar cell
6
tissue
liver
46
pancreas
4
1
white adipose tissue
2
in vitro differentiated cells
adipocyte
3
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