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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
131
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
93
transcription factor
70
recombinant protein
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
4
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
68
November, 2017
32
August, 2017
23
November, 2018
8
October, 2018
7
August, 2020
4
September, 2020
Available data
141
fastq
131
bam
127
bigWig
117
bed narrowPeak
87
bigBed narrowPeak
1
zippedFastqFolder
Organism
142
Homo sapiens
Biosample type
85
cell line
31
in vitro differentiated cells
14
tissue
12
primary cell
Organ
85
liver
39
connective tissue
10
epithelium
10
pancreas
8
adipose tissue
6
spleen
Project
131
AMP
11
HPAP
Genome assembly (visualization)
127
GRCh38
114
hg19
Lab
131
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.platform.term_name!
Illumina HiSeq 2500
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
85
in vitro differentiated cells
adipocyte
31
tissue
spleen
6
omental fat pad
4
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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