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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 131DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 93transcription factor
  • 70recombinant protein
  • 25histone
  • 25histone modification
  • 13control
  • 13narrow histone mark
  • 12broad histone mark
  • 4RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1chromatin remodeller
Date released
  • 68November, 2017
  • 32August, 2017
  • 23November, 2018
  • 8October, 2018
  • 7August, 2020
  • 4September, 2020
Available data
  • 141fastq
  • 131bam
  • 127bigWig
  • 117bed narrowPeak
  • 87bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 142Homo sapiens
Biosample type
  • 85cell line
  • 31in vitro differentiated cells
  • 14tissue
  • 12primary cell
Organ
  • 85liver
  • 39connective tissue
  • 10epithelium
  • 10pancreas
  • 8adipose tissue
  • 6spleen
Project
  • 131AMP
  • 11HPAP
Genome assembly (visualization)
  • 127GRCh38
  • 114hg19
Lab
  • 131AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

142 results

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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG285
in vitro differentiated cells
adipocyte31
tissue
spleen6
omental fat pad4
subcutaneous adipose tissue4
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
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