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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 568ChIP-seq
  • 107total RNA-seq
  • 67single cell RNA-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
Assay category
  • 568DNA binding
  • 174Transcription
  • 5DNA accessibility
  • 4DNA methylation
Target of assay
  • 295transcription factor
  • 165histone
  • 165histone modification
  • 107control
  • 85broad histone mark
  • 82recombinant protein
  • 79narrow histone mark
  • 36RNA binding protein
  • 13chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 263November, 2017
  • 167August, 2017
  • 76February, 2023
  • 39February, 2018
  • 38December, 2017
  • 34September, 2020
  • 32September, 2018
  • 31July, 2018
  • 31November, 2018
  • 16April, 2018
  • 9October, 2017
  • 6September, 2017
  • 5January, 2019
  • 2October, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 734fastq
  • 635bam
  • 542bigWig
  • 422bed narrowPeak
  • 304bigBed narrowPeak
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 64tsv
  • 39tagAlign
  • 36bed bed3+
  • 18zippedFastqFolder
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 744Homo sapiens
Biosample type
  • 284cell line
  • 249primary cell
  • 131tissue
  • 87in vitro differentiated cells
Organ
  • 333liver
  • 207pancreas
  • 136epithelium
  • 65connective tissue
  • 19brain
  • 14adipose tissue
  • 13embryo
  • 6vasculature
  • 5blood
  • 5bodily fluid
  • 3blood vessel
  • 2musculature of body
Project
  • 641AMP
  • 110HPAP
Genome assembly (visualization)
  • 547hg19
  • 489GRCh38
Lab
  • 641AMP-T2D consortium
  • 110Klaus Kaestner, Upenn
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 76missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

751 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RRBS
DNase-seq
FAIRE-seq
cell line
HepG2279
GM128785
primary cell
pancreatic alpha cell13424
exocrine cell39
pancreatic beta cell13114
pancreatic endocrine cell23
Langerhans cell18
tissue
liver531
islet of Langerhans26611
pancreas161
white adipose tissue12
brain91
in vitro differentiated cells
adipocyte48
pancreatic endoderm94
definitive endodermal cell32
embryonic stem cell32
endocrine cell32
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