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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
72
ChIP-seq
6
ATAC-seq
3
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
72
DNA binding
8
DNA accessibility
3
DNA methylation
Target of assay
32
histone
32
histone modification
23
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
54
August, 2017
22
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
423
bigWig
401
tsv
40
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
486
Homo sapiens
Biosample type
484
tissue
2
primary cell
1
in vitro differentiated cells
Organ
895
pancreas
729
liver
675
connective tissue
487
adipose tissue
479
epithelium
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
23
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
487
AMP
Genome assembly (visualization)
426
hg19
422
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.platform.term_name!
Illumina HiSeq 2500
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
10
1
1
2
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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