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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 492ChIP-seq
  • 189total RNA-seq
  • 23ATAC-seq
  • 5DNase-seq
  • 4Hi-C
  • 4WGBS
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 492DNA binding
  • 193Transcription
  • 28DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 303transcription factor
  • 103control
  • 84histone modification
  • 83histone
  • 82recombinant protein
  • 51narrow histone mark
  • 32broad histone mark
  • 29RNA binding protein
  • 11chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 293November, 2017
  • 194May, 2020
  • 52August, 2017
  • 42December, 2017
  • 40May, 2022
  • 36November, 2018
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 620bam
  • 567bigWig
  • 403fastq
  • 386bed narrowPeak
  • 303bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 62bed broadPeak
  • 62bigBed broadPeak
  • 12bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 729Homo sapiens
Biosample type
  • 363cell line
  • 352tissue
  • 14primary cell
Organ
  • 895pancreas
  • 729liver
  • 675connective tissue
  • 487adipose tissue
  • 479epithelium
  • 393heart
  • 354kidney
  • 284brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 59blood
  • 59bodily fluid
  • 43nerve
  • 23embryo
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 729AMP
Genome assembly (visualization)
  • 571hg19
  • 478GRCh38
Lab
  • 658AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 16inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

729 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG234014121221
tissue
liver144167201121111
right lobe of liver431212
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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