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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 489ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 489DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Target of assay
  • 346transcription factor
  • 95histone
  • 95histone modification
  • 88recombinant protein
  • 50control
  • 49broad histone mark
  • 46narrow histone mark
  • 40RNA binding protein
  • 14chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 273November, 2017
  • 74October, 2019
  • 56May, 2020
  • 45November, 2018
  • 32February, 2021
  • 32June, 2019
  • 27December, 2017
  • 26December, 2018
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 18August, 2021
  • 16January, 2019
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 591bam
  • 537bigWig
  • 481bed narrowPeak
  • 425bigBed narrowPeak
  • 416fastq
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 26tagAlign
  • 24bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 737Homo sapiens
Biosample type
  • 417cell line
  • 174primary cell
  • 102tissue
  • 44in vitro differentiated cells
Organ
  • 355liver
  • 73epithelium
  • 56pancreas
  • 48blood
  • 48bodily fluid
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11connective tissue
  • 8embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 708AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 586hg19
  • 500GRCh38
Lab
  • 693AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 27inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 5missing controlled_by
Audit category:
  • 17inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

737 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2297152112
GM1287848
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
liver3611
islet of Langerhans1911
brain511
thoracic aorta7
heart51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
lymphocyte of B lineage (iPSC)111
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