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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 471ChIP-seq
Assay category
  • 471DNA binding
Target of assay
  • 960histone modification
  • 959histone
  • 487narrow histone mark
  • 471broad histone mark
  • 456transcription factor
  • 323control
  • 89recombinant protein
  • 79RNA binding protein
  • 16chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 109August, 2017
  • 76May, 2021
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 20May, 2024
  • 17September, 2018
  • 10October, 2017
  • 9August, 2021
  • 8February, 2018
  • 8June, 2019
  • 8October, 2018
  • 6November, 2019
Available data
  • 397bigWig
  • 390bed narrowPeak
  • 348bam
  • 217bigBed narrowPeak
  • 147tagAlign
  • 88fastq
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 7bed bed3+
Organism
  • 467Homo sapiens
Biosample type
  • 285tissue
  • 122primary cell
  • 45in vitro differentiated cells
  • 19cell line
Organ
  • 70brain
  • 67pancreas
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 37epithelium
  • 34limb
  • 32liver
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 3embryo
Project
  • 427AMP
  • 44T1D
Genome assembly (visualization)
  • 362GRCh38
  • 341hg19
Lab
  • 376AMP-T2D consortium
  • 74Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

471 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm3
definitive endodermal cell1
cell line
HepG29
EndoC_BH16
Panc14
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