Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 959ChIP-seq
Assay category
  • 959DNA binding
Target of assay
  • 960histone modification
  • 959histone
  • 487narrow histone mark
  • 471broad histone mark
  • 456transcription factor
  • 323control
  • 89recombinant protein
  • 79RNA binding protein
  • 16chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 196August, 2017
  • 196October, 2019
  • 140May, 2021
  • 92May, 2019
  • 87November, 2017
  • 60April, 2019
  • 35May, 2024
  • 32September, 2018
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 16February, 2018
  • 14October, 2018
  • 12October, 2017
  • 10November, 2019
  • 3March, 2020
Available data
  • 812bigWig
  • 794bed narrowPeak
  • 727bam
  • 349bigBed narrowPeak
  • 321tagAlign
  • 172fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 15bed bed3+
  • 1tagAlign bed3+
Organism
  • 953Homo sapiens
Biosample type
  • 598tissue
  • 237primary cell
  • 88in vitro differentiated cells
  • 36cell line
Organ
  • 187brain
  • 134pancreas
  • 97heart
  • 83liver
  • 79epithelium
  • 78connective tissue
  • 71vasculature
  • 70blood vessel
  • 49limb
  • 33musculature of body
  • 32adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 6embryo
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 871AMP
  • 88T1D
Genome assembly (visualization)
  • 747GRCh38
  • 727hg19
Lab
  • 787AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
Audit category:
  • 52missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

959 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver63
islet of Langerhans50
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
pancreatic ductal cell13
in vitro differentiated cells
adipocyte37
embryonic stem cell22
neural progenitor cell14
pancreatic endoderm6
definitive endodermal cell2
cell line
HepG217
EndoC_BH112
Panc17
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego