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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 487ChIP-seq
Assay category
  • 487DNA binding
Target of assay
  • 960histone modification
  • 959histone
  • 487narrow histone mark
  • 471broad histone mark
  • 456transcription factor
  • 323control
  • 89recombinant protein
  • 79RNA binding protein
  • 16chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 141October, 2019
  • 86August, 2017
  • 64May, 2021
  • 37November, 2017
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 8February, 2018
  • 6October, 2018
  • 4November, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 414bigWig
  • 403bed narrowPeak
  • 378bam
  • 174tagAlign
  • 132bigBed narrowPeak
  • 83fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 8bed bed3+
  • 1tagAlign bed3+
Organism
  • 485Homo sapiens
Biosample type
  • 313tissue
  • 115primary cell
  • 42in vitro differentiated cells
  • 17cell line
Organ
  • 117brain
  • 67pancreas
  • 51liver
  • 42epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3embryo
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 443AMP
  • 44T1D
Genome assembly (visualization)
  • 385hg19
  • 384GRCh38
Lab
  • 410AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 27missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

487 results

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Clear Filters
ChIP-seq
tissue
liver41
islet of Langerhans36
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
monocyte41
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
endothelial cell of umbilical vein6
in vitro differentiated cells
adipocyte16
embryonic stem cell11
neural progenitor cell7
pancreatic endoderm3
definitive endodermal cell1
cell line
HepG28
EndoC_BH16
Panc13
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