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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 456ChIP-seq
Assay category
  • 456DNA binding
Target of assay
  • 960histone modification
  • 959histone
  • 487narrow histone mark
  • 471broad histone mark
  • 456transcription factor
  • 323control
  • 89recombinant protein
  • 79RNA binding protein
  • 16chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 227November, 2017
  • 46November, 2018
  • 42August, 2017
  • 31December, 2017
  • 26December, 2018
  • 16May, 2021
  • 14October, 2018
  • 11August, 2021
  • 10January, 2019
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 439bigWig
  • 427bam
  • 417bed narrowPeak
  • 396fastq
  • 362bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 456Homo sapiens
Biosample type
  • 320cell line
  • 93tissue
  • 33in vitro differentiated cells
  • 10primary cell
Organ
  • 303liver
  • 43blood
  • 43bodily fluid
  • 35connective tissue
  • 18pancreas
  • 17adipose tissue
  • 17heart
  • 10kidney
  • 9vasculature
  • 8blood vessel
  • 7epithelium
  • 6spleen
  • 5artery
  • 3brain
  • 1eye
Project
  • 456AMP
Genome assembly (visualization)
  • 431hg19
  • 393GRCh38
Lab
  • 428AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 27inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 11inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

456 results

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Clear Filters
ChIP-seq
cell line
HepG2264
GM1287843
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas8
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte17
embryonic stem cell12
cardiomyocytes3
pancreatic PP cell1
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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